BtaEX6049089 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62075577-62111291:+
Coord C1 exon
chr9:62075577-62075648
Coord A exon
chr9:62081430-62081594
Coord C2 exon
chr9:62111223-62111291
Length
165 bp
Sequences
Splice sites
3' ss Seq
AATTGTCTGGTTTAATTCAGGCA
3' ss Score
6.25
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAAATGATTATTGACAGAGTTAATGGACAGGCCGTTCCTAGATACTTGATATATGACATAATTAAATTCAAT
Seq A exon
GCACAGCCGGTTGGAGATTGTGATTTTAATATTCGTCTTCAGTGTATAGAAAGAGAAATAATAAATCCTCGACATGAAAAAATGAAGACAGGGCTCATTGACAAAACACAGGAACCATTCAGTGTCAGACATAAGCCATTTTTTGACATCTATGCTTCAAGAAAG
Seq C2 exon
CTACTTGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTCCAGCCCACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'16-20,'16-17,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
A:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACAGAGTTAATGGACAGGCC
R:
CAGTGGGCTGGAAAATAAGTCCA
Band lengths:
130-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]