Special

HsaEX6048501 @ hg19

Exon Skipping

Gene
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:10073]
Coordinates
chr6:89511283-89559545:-
Coord C1 exon
chr6:89559474-89559545
Coord A exon
chr6:89554076-89554240
Coord C2 exon
chr6:89511283-89511351
Length
165 bp
Sequences
Splice sites
3' ss Seq
TAATTCTTTATTTAATTCAGTCA
3' ss Score
3.73
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGATGATTATTGACAGAGTAAATGGACAGGCTGTTCCTAGATATTTGATATATGACATAATTAAATTCAAT
Seq A exon
TCACAGCCCGTTGGAGATTGTGATTTTAATGTTCGTCTGCAGTGTATAGAACGAGAAATTATAAGTCCTCGACACGAAAAAATGAAGACTGGGCTCATTGACAAAACACAGGAACCATTTAGCGTCAGAAATAAGCCGTTTTTTGACATCTGTACTTCAAGAAAG
Seq C2 exon
CTACTTGAAGGAAATTTTGCCAAAGAAGTGAGCCATGAAATGGATGGACTTATTTTTCAGCCTACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111880-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0133114=mRNA_cap_enzyme=FE(14.9=100)
A:
PF0133114=mRNA_cap_enzyme=FE(35.1=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAGTAAATGGACAGGCTG
R:
TCCAGTAGGCTGAAAAATAAGTCCA
Band lengths:
130-295
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains