HsaEX6048501 @ hg38
Exon Skipping
Gene
ENSG00000111880 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr6:88801564-88849826:-
Coord C1 exon
chr6:88849755-88849826
Coord A exon
chr6:88844357-88844521
Coord C2 exon
chr6:88801564-88801632
Length
165 bp
Sequences
Splice sites
3' ss Seq
TAATTCTTTATTTAATTCAGTCA
3' ss Score
3.73
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGATGATTATTGACAGAGTAAATGGACAGGCTGTTCCTAGATATTTGATATATGACATAATTAAATTCAAT
Seq A exon
TCACAGCCCGTTGGAGATTGTGATTTTAATGTTCGTCTGCAGTGTATAGAACGAGAAATTATAAGTCCTCGACACGAAAAAATGAAGACTGGGCTCATTGACAAAACACAGGAACCATTTAGCGTCAGAAATAAGCCGTTTTTTGACATCTGTACTTCAAGAAAG
Seq C2 exon
CTACTTGAAGGAAATTTTGCCAAAGAAGTGAGCCATGAAATGGATGGACTTATTTTTCAGCCTACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111880_MULTIEX2-9/12=8-11
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(14.9=100)
A:
PF0133114=mRNA_cap_enzyme=FE(35.1=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
Main Skipping Isoform:
ENST00000369485fB24716
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGAGTAAATGGACAGGCTG
R:
TCCAGTAGGCTGAAAAATAAGTCCA
Band lengths:
130-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains