MmuEX0040221 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33362880-33379437:+
Coord C1 exon
chr4:33362880-33362951
Coord A exon
chr4:33368573-33368737
Coord C2 exon
chr4:33379369-33379437
Length
165 bp
Sequences
Splice sites
3' ss Seq
CAACTTGTTCTTTTATTCAGGCA
3' ss Score
7.64
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAAATGATCATTGACAAAGTAAATGGACAGGCCGTCCCAAGATATTTGATCTATGACATAATTAAGTTCAAT
Seq A exon
GCACAACCAGTTGGAGACTGTGATTTTAATATTCGTCTACAGTGTATTGAACGTGAAATTATAAGTCCACGACATGAAAAAATGAAGACTGGACTCATTGACAAAACACAGGAACCATTTAGTGTCAGACCTAAACAATTTTTTGACATCAATATTTCAAGAAAG
Seq C2 exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCTATTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'27-30,'27-24,28-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
A:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCATTGACAAAGTAAATGGACA
R:
TCCAATAGGCTGAAAAATAAGTCCA
Band lengths:
138-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types