GgaEX1049774 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78620141-78658859:+
Coord C1 exon
chr3:78620141-78620212
Coord A exon
chr3:78636233-78636397
Coord C2 exon
chr3:78658791-78658859
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGATTTTGTTCATTTGACAGGGA
3' ss Score
6.51
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GAAATGATCGTCGACAAGGTTAATGGACAGGTTGTTCCTCGGTACTTGATATATGACATTATTAAGTTTAAT
Seq A exon
GGACAGCCAGTTGGAGACTGTGATTTTAATGTTCGACTTTCATGTATAGAGAAAGAGATTATATTTCCACGACATGAAAAAATGAAGACAGGTCACATTGACAAAGCACAGGAACCGTTCAGTGTTCGAAACAAACCATTCTTTGACATCTATGCTTCAAGAAAG
Seq C2 exon
CTCCTGGAAGGAAGCTTTGCTAGAGAAGTTAGCCACGAAGTGGATGGATTGATATTTCAGCCTACAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'16-20,'16-17,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
A:
PF0133114=mRNA_cap_enzyme=FE(28.6=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCGTCGACAAGGTTAATGGA
R:
TCCTGTAGGCTGAAATATCAATCCA
Band lengths:
138-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]