BtaEX6049092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62038003-62066668:+
Coord C1 exon
chr9:62038003-62038112
Coord A exon
chr9:62039302-62039403
Coord C2 exon
chr9:62066533-62066668
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATACAGTGATCTTCGTTAAGGTC
3' ss Score
1.69
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGTGCTATTTTTTTGGAGGGTGTAACTGTTAAAGGTGTAACTCAAGTGACAACTCAGCCAAAGTTAGGAGAGGTACAGCAGAAGTGTCATCAATTCTGTGGCTGGGAAGG
Seq A exon
GTCTGGATTCCCTGGAGCACAGCCTGTTTCCATGGACAAGCAAAACATTAAACTTTTGGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGATGGTACTCG
Seq C2 exon
GTATATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGATAGAGATAATTCAGTGTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGTATGCATTTATCAAATACTCTGTTAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'11-15,'11-12,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
C2:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGGTGTAACTGTTAAAGGTG
R:
ACAGAGTATTTGATAAATGCATACGG
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]