RnoEX0076565 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48590870-48607487:+
Coord C1 exon
chr5:48590870-48590979
Coord A exon
chr5:48591847-48591948
Coord C2 exon
chr5:48607352-48607487
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGTAATGTTCTTTCTTTAAGGTC
3' ss Score
8.52
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGAGCTATTTTCTTGGAAGGAATAACTGTTAAAGGAGTAACTCAAGTAACAACTCAACCGAAGTTAGGAGAGGTACAGCAGAAGTGCCATCAGTTCTGTGGCTGGGAAGG
Seq A exon
GTCTGGGTTCCCTGGAGCACAGCCTGTCTCCATGGACAAGCAAAATATTAGACTTTTAGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGACGGTACTCG
Seq C2 exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGCATGCATTTATCAAATACTCTTTTGGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
C2:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTATTTTCTTGGAAGGAATAAC
R:
AGTATTTGATAAATGCATGCGGAGA
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]