MmuEX1022693 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33337863-33356196:+
Coord C1 exon
chr4:33337863-33337972
Coord A exon
chr4:33338991-33339092
Coord C2 exon
chr4:33356061-33356196
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTAATGTTCTTTCTTTAAGGTC
3' ss Score
9.88
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GGAGCTATTTTCTTGGAAGGCATAACTGTTAAAGGTGTAACTCAAGTAACAACTCAACCCAAGTTAGGAGAGGTGCAGCAGAAATGTCATCAGTTCTGTGGCTGGGAAGG
Seq A exon
GTCTGGGTTCCCTGGAGCACAGCCTGTCTCCATGGACAAGCAAAATATTAGACTTTTAGAGCAGAAGCCTTATAAAGTAAGCTGGAAAGCAGACGGCACTCG
Seq C2 exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATTTATCAAATACTCTTTTGGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'11-17,'11-14,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
C2:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTATTTTCTTGGAAGGCA
R:
AGAGTATTTGATAAATGCATGCGA
Band lengths:
236-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types