GgaEX6031484 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78589541-78613788:+
Coord C1 exon
chr3:78589541-78589650
Coord A exon
chr3:78590440-78590541
Coord C2 exon
chr3:78613653-78613788
Length
102 bp
Sequences
Splice sites
3' ss Seq
AAACATATTTCTCTTTTTAGGTC
3' ss Score
10.57
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GGTGCAGTTTTCTTGGAAGGTGTAACAGTTAAATATGTGACCCAGGTGACAACACAACCAAAGCTGGGAGGAATACAGCAGAAGTGTCAGCAGTTCTGTGGATGGGAAGG
Seq A exon
GTCTGGATTCCCTGGAGCACAGCCTGTTTCCATGGACAAGCAAAATATTAAATTTCTGGAACAGAAGCCATACAAAGTTAGCTGGAAAGCAGACGGTACTCG
Seq C2 exon
GTACATGATGCTGATTGATGGCAAGAATGAAGTATATATGATTGATAGAGACAATTCAATTTTTCATGTATCTAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATCTAACAAACACTCTTCTAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'11-14,'11-11,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
C2:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTTTTCTTGGAAGGTG
R:
CCCATCTAGAAGAGTGTTTGTTAGA
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]