DreEX0062745 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1043986-1059158:-
Coord C1 exon
chr20:1059049-1059158
Coord A exon
chr20:1058163-1058264
Coord C2 exon
chr20:1043986-1044121
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTATCTGCTTGTCTGTCAGATC
3' ss Score
9.95
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGCGCTGTGTTTCTGGAAGGCGTCTCTGTCAAAGGAGTCTCTCAAGTCACAACACAGCCCAAACTCGGAGAAATCCAGAGGAAGTGCCAGCAGTTCTCAGAGTGGGACAG
Seq A exon
ATCTGGCTTTCCTGGTGCTCAACCGGTATCGATGGACCGCAAGAACATTCGCATGCTGGAGCAGAATGGGTATAAAGTCAGCTGGAAAGCAGACGGCACACG
Seq C2 exon
GTACATGATGTTGATAGATGGGAGAAATGAAGTTTACATGATCGACAGAGACAACTCTGTCTTCCACATAGAAAACCTGGAGTTTCCCTTCCGGAAGGATCTGCGCATCCACCTTTCCAACACACTTTTGGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'6-9,'6-7,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
C2:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTTCTGGAAGGCGTCT
R:
CCCATCCAAAAGTGTGTTGGA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]