MmuEX0040230 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33338991-33362951:+
Coord C1 exon
chr4:33338991-33339092
Coord A exon
chr4:33356061-33356196
Coord C2 exon
chr4:33362880-33362951
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATGTTTTATTACAGTTA
3' ss Score
8.59
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGGGTTCCCTGGAGCACAGCCTGTCTCCATGGACAAGCAAAATATTAGACTTTTAGAGCAGAAGCCTTATAAAGTAAGCTGGAAAGCAGACGGCACTCG
Seq A exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATTTATCAAATACTCTTTTGGATGGG
Seq C2 exon
GAAATGATCATTGACAAAGTAAATGGACAGGCCGTCCCAAGATATTTGATCTATGACATAATTAAGTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'14-22,'14-17,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGTTCCCTGGAGCA
R:
AGATCAAATATCTTGGGACGGCC
Band lengths:
154-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types