BtaEX6049091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62039302-62075648:+
Coord C1 exon
chr9:62039302-62039403
Coord A exon
chr9:62066533-62066668
Coord C2 exon
chr9:62075577-62075648
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTTAATGTTTCATTTACAGGTA
3' ss Score
11.52
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGGATTCCCTGGAGCACAGCCTGTTTCCATGGACAAGCAAAACATTAAACTTTTGGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGATGGTACTCG
Seq A exon
GTATATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGATAGAGATAATTCAGTGTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGTATGCATTTATCAAATACTCTGTTAGATGGG
Seq C2 exon
GAAATGATTATTGACAGAGTTAATGGACAGGCCGTTCCTAGATACTTGATATATGACATAATTAAATTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'12-16,'12-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGATTCCCTGGAGCACA
R:
ATATCAAGTATCTAGGAACGGCC
Band lengths:
154-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]