GgaEX1049780 @ galGal4
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr3:75281826-75311226:+
Coord C1 exon
chr3:75281826-75281927
Coord A exon
chr3:75304667-75304802
Coord C2 exon
chr3:75311155-75311226
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTTAACGTTGCCTTTGCAGGTA
3' ss Score
10.81
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTGGATTCCCTGGAGCACAGCCTGTTTCCATGGACAAGCAAAATATTAAATTTCTGGAACAGAAGCCATACAAAGTTAGCTGGAAAGCAGACGGTACTCG
Seq A exon
GTACATGATGCTGATTGATGGCAAGAATGAAGTATATATGATTGATAGAGACAATTCAATTTTTCATGTATCTAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATCTAACAAACACTCTTCTAGATGGG
Seq C2 exon
GAAATGATCGTCGACAAGGTTAATGGACAGGTTGTTCCTCGGTACTTGATATATGACATTATTAAGTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGATTCCCTGGAGCACA
R:
AATGTCATATATCAAGTACCGAGGA
Band lengths:
162-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]