DreEX0062746 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1043381-1058264:-
Coord C1 exon
chr20:1058163-1058264
Coord A exon
chr20:1043986-1044121
Coord C2 exon
chr20:1043381-1043452
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTGTGTTTTTACAGGTA
3' ss Score
12.72
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATCTGGCTTTCCTGGTGCTCAACCGGTATCGATGGACCGCAAGAACATTCGCATGCTGGAGCAGAATGGGTATAAAGTCAGCTGGAAAGCAGACGGCACACG
Seq A exon
GTACATGATGTTGATAGATGGGAGAAATGAAGTTTACATGATCGACAGAGACAACTCTGTCTTCCACATAGAAAACCTGGAGTTTCCCTTCCGGAAGGATCTGCGCATCCACCTTTCCAACACACTTTTGGATGGG
Seq C2 exon
GAGATGATTATCGACAAGGTGAACGGCCAGCCTGTCCCACGCTATCTCATCTATGACATCATCAAGTTTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCTTTCCTGGTGCTCA
R:
GCTAAACTTGATGATGTCATAGATGA
Band lengths:
174-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]