RnoEX0076566 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48591847-48619228:+
Coord C1 exon
chr5:48591847-48591948
Coord A exon
chr5:48607352-48607487
Coord C2 exon
chr5:48619157-48619228
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTTAATGTTTTATTATAGTTA
3' ss Score
7.45
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTGGGTTCCCTGGAGCACAGCCTGTCTCCATGGACAAGCAAAATATTAGACTTTTAGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGACGGTACTCG
Seq A exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTCCGCATGCATTTATCAAATACTCTTTTGGATGGG
Seq C2 exon
GAAATGATCATCGATAAAGTAAATGGACAGGCCGTTCCAAGATATTTGATATATGACATAATTAAGTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-'11-14,'11-12,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGTTCCCTGGAGCA
R:
ATATCAAATATCTTGGAACGGCCTGT
Band lengths:
154-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]