GgaEX1049780 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78590440-78620212:+
Coord C1 exon
chr3:78590440-78590541
Coord A exon
chr3:78613653-78613788
Coord C2 exon
chr3:78620141-78620212
Length
136 bp
Sequences
Splice sites
3' ss Seq
TCTTAACGTTGCCTTTGCAGGTA
3' ss Score
10.81
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCTGGATTCCCTGGAGCACAGCCTGTTTCCATGGACAAGCAAAATATTAAATTTCTGGAACAGAAGCCATACAAAGTTAGCTGGAAAGCAGACGGTACTCG
Seq A exon
GTACATGATGCTGATTGATGGCAAGAATGAAGTATATATGATTGATAGAGACAATTCAATTTTTCATGTATCTAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATCTAACAAACACTCTTCTAGATGGG
Seq C2 exon
GAAATGATCGTCGACAAGGTTAATGGACAGGTTGTTCCTCGGTACTTGATATATGACATTATTAAGTTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'12-16,'12-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=PU(14.3=77.1)
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0133114=mRNA_cap_enzyme=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGATTCCCTGGAGCACA
R:
AATGTCATATATCAAGTACCGAGGA
Band lengths:
162-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]