MmuEX0040230 @ mm9
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33397286-33589589:+
Coord C1 exon
chr4:33397286-33397427
Coord A exon
chr4:33443036-33443171
Coord C2 exon
chr4:33587213-33589589
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTTCATGTTTTATTACAGTTA
3' ss Score
8.59
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGGCGGAAGTCGCAGTGCATTGTGGGTTCGCCGGGAGCCGCGGAGTCGAACCTGAATGAAAGTGGCGCGCCGCTGAGGACCCGGGTAGAGCTGCTGCCGTTGGGGTCCGGGCTGGTTTGCTGTGGAGCTATCGGCGAGGCG
Seq A exon
TTACATGATGTTGATTGATGGCACAAATGAAGTTTTTATGATTGACAGAGATAATTCCGTTTTTCATGTTTCAAATCTGGAATTTCCATTTCGTAAAGATCTTCGCATGCATTTATCAAATACTCTTTTGGATGGG
Seq C2 exon
CTGTGTGCAATAGCATCTCGAACCCTGTCACCAAGGAGATGCTGTTTGAATTCATTGACAGATGTGCAGCAGCCGCCCAGGGACAGAAGCGGAAGTATCCCCTGGACCCTGACACGGAGCTCATGCCGCCCCCACCGCCCAAAAGACTGCATCGGCCAACCTAGTCCGTGCCTCTGAGAGGAAGAAAAATGCTGTTGTCTCATTTTCTCAACCAGAGAAATTAAAGAGACGAGCGGCTTCGTACTGGTACACGTGTTTTAAGGGAAGACATAGTCAGCCTGTATATATTTGGTACATTTGTTTCCTTGGAACTACAGTACATCATGGACCTAAATATTTTATTTATACCTGATAAATTCAGCCTTACCCTGTGGAGTCTACAGATTGAAATACCCAAAGGTTTAAATCAGATTGAAGTTAATGAAATAGAGGCCTTGTTTGTATGTGAATAGATACCTTTACATTTGATTCATAACTAGCAATCTGAAGCTGTAAGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274_MULTIEX1-9/16=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
PF0133114=mRNA_cap_enzyme=FE(23.8=100)
C2:
PF0391910=mRNA_cap_C=PD(16.3=29.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGAATGAAAGTGGCGC
R:
GTTGGCCGATGCAGTCTTTTG
Band lengths:
254-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: