BtaEX6050720 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034998 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr10:4990795-5000698:-
Coord C1 exon
chr10:5000544-5000698
Coord A exon
chr10:4992887-4993039
Coord C2 exon
chr10:4990795-4990923
Length
153 bp
Sequences
Splice sites
3' ss Seq
TATCTTTTTCTCCATTGCAGGGA
3' ss Score
11.69
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGACAAAACCTGCCCGGGCGAGTCTTCTTTCTGCGTTATGTAGTACAGACCCTGGAAGACGATTTCCAGCAGATCCTGAGGAAGCAGCGACAGCACCTGCAGCAAGCCATCGCAAGCACTGTGCTGTCCTGTGACAAGCAACCCCACAATGTCAG
Seq A exon
GGATGTCATCAAGTGGTTGATCAGAGCAGTAACTGAAGACAGATTAATCCAGCCCCCAAATGAGAATCAAACCTCTCCAGGAAAAGGAATCTTGAAGACCAGCAGTAGCCACCCTTCTTCCCAACCTAACCTGACAAAGAACGCCAATCAGCT
Seq C2 exon
GATTATATGCCAGCTCCAGAGGATGCTGTCTATCGCTGTAGAGGTGGACAGGACCCCCACATGCAGCTCCAATAAAATTGCTGAAATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034998-'9-12,'9-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGTCTTCTTTCTGCGTT
R:
GGAATGTCCAGCACAAACCCA
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]