Special

GgaEX0004415 @ galGal4

Exon Skipping

Gene
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr13:9754402-9755710:-
Coord C1 exon
chr13:9755565-9755710
Coord A exon
chr13:9755048-9755227
Coord C2 exon
chr13:9754402-9754530
Length
180 bp
Sequences
Splice sites
3' ss Seq
CATTCCTGTTTCTGTCCCAGGGA
3' ss Score
9.93
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGAAGCTCCCTGGACGACTCCTCTTCCTGCAATATGTCGTGCAGACCTTGGAGGATGACTTCCAGCAAAACCTGAGGCTGCACCTGCTGCAGAAGTCAATAACCAAGAAAGTGCTTTCCTGTGACACATGCTTCAACAATGTCAA
Seq A exon
GGAGGTGGTTGAATGGTTGGTTGCAGTAGTGACAGGAATCAGATTCTTCCAGCTGCAGGAGCAGACACAAGAAATGACACGCTTGTCAGCAGAAACAGGAGCTGAATGTAGCTCATCTGCAGCACAGCCAGCCAGCACTGACCAAGCACAGCTGACTCCACCAACATTCTTCGCCCAGAA
Seq C2 exon
GGCAATGCTCCTCCTCCAGAGGATGTTGTCCTTCGCAGTGGAAGTGGACAGATCTCCCAACTGCAGCTCCTGTAAGATTGCAGATCTAATATTCCCATTTTTACTGAATATTCCTGTGAGGAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGACGACTCCTCTTC
R:
CACAGGAATATTCAGTAAAAATGGGA
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]