DreEX6059330 @ danRer10
Exon Skipping
Gene
ENSDARG00000098209 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr14:49787297-49788267:-
Coord C1 exon
chr14:49788104-49788267
Coord A exon
chr14:49787854-49787940
Coord C2 exon
chr14:49787297-49787428
Length
87 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTGTTTCTTGTTAGAGA
3' ss Score
6.98
5' ss Seq
TAAGTATAT
5' ss Score
-1.83
Exon sequences
Seq C1 exon
GATGACACGTGGAGGCTGCGAACGGAGGTTCAGGTCATGCTTCTGCAGTATGTGCTGCAGGGTTTAGAAGATGACTTTCATCTGAAGCTCAGCACTCAGTGTCTTCAACACTCTCTAGCCAAGAAGGTGCTTTCATGTGGCCCTGAAACATTTGGGCAGGTCAG
Seq A exon
AGATGTAATATCGTGGACGATGACTGCTGCTAAGGAGTCAGTGAAACACTCTAAGGAACATCCAAAGAAAGAAGACCACTATCTTAA
Seq C2 exon
AATGGTACTATCTCTTCAGAGAATGTTATCATTGGCTCTGGAAGTGGACAAGGACCCCACCTACAATTCCGACAAACTTTCAGAAGCGCTGATTCGTAGTTTGAACAGATTGTGTTCATGCAGAGAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098209-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCTCAGCACTCAGTGT
R:
GCGCTTCTGAAAGTTTGTCGG
Band lengths:
172-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]