GgaEX0004415 @ galGal3
Exon Skipping
Gene
ENSGALG00000003377 | C5orf25
Description
NA
Coordinates
chr13:10498139-10500532:-
Coord C1 exon
chr13:10500387-10500532
Coord A exon
chr13:10499870-10500049
Coord C2 exon
chr13:10498139-10498295
Length
180 bp
Sequences
Splice sites
3' ss Seq
CATTCCTGTTTCTGTCCCAGGGA
3' ss Score
9.93
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGAAGCTCCCTGGACGACTCCTCTTCCTGCAATATGTCGTGCAGACCTTGGAGGATGACTTCCAGCAAAACCTGAGGCTGCACCTGCTGCAGAAGTCAATAACCAAGAAAGTGCTTTCCTGTGACACATGCTTCAACAATGTCAA
Seq A exon
GGAGGTGGTTGAATGGTTGGTTGCAGTAGTGACAGGAATCAGATTCTTCCAGCTGCAGGAGCAGACACAAGAAATGACACGCTTGTCAGCAGAAACAGGAGCTGAATGTAGCTCATCTGCAGCACAGCCAGCCAGCACTGACCAAGCACAGCTGACTCCACCAACATTCTTCGCCCAGAA
Seq C2 exon
GGAAGCCCTCTTAAACACCATGGAGAGCAACCTGCTGCGCTGCAAACTGCTAGAGATGATGTTCCAGCACAGTTGTAAGGTCCCCACAAACTTGCCCTTGTCTCTGTCCAAGATCCTCTATTTTCTAGGCCACTCCTCCGTGCTGCTGCAATACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGACGACTCCTCTTC
R:
AGACAAGGGCAAGTTTGTGGG
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]