RnoEX0080939 @ rn6
Exon Skipping
Gene
ENSRNOG00000016932 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]
Coordinates
chr17:10607410-10611083:-
Coord C1 exon
chr17:10610929-10611083
Coord A exon
chr17:10609228-10609380
Coord C2 exon
chr17:10607410-10607538
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGGTCTCTTCTGTATTCCAGAGA
3' ss Score
7.88
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
Exon sequences
Seq C1 exon
GGGCAAACTTTACCTGGACGAGTTCTCTTTCTACGGTACGTGGTGCAGACCCTGGAGGATGACTTCCAGCAGATCCTGAGGAGACAGCGGCAGCACCTACAGCAATCCATTGCAAACACGGTTCTGTCATGTGACAAACAGCCCCACAACGTCAG
Seq A exon
AGATGTTATCAAGTGGCTGGTCAAAGCAGTGACTGAAAATGCATTAACTCCACCCCAGGACGAGACGCAGACCTCTCCAGGACCAGGAGTCTTGAAAACGAGCAGTGACCATCTGTCACCCCAGCCTAACCTGGCCAGGAACACCAATCAACT
Seq C2 exon
GATTGTGTGTCAGCTTCAGAGGATGCTGTCCATCGCCGTAGAGGTAGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGACATCCCCGAGAGGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016932-'12-15,'12-13,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.519 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAACTTTACCTGGACGA
R:
AACCCAAACATCATCTCCGCT
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]