GgaEX0004416 @ galGal4
Exon Skipping
Gene
ENSGALG00000003377 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr13:9753317-9755710:-
Coord C1 exon
chr13:9755565-9755710
Coord A exon
chr13:9754402-9754530
Coord C2 exon
chr13:9753317-9753473
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTACTCTTTCCCTAACCTAGGGC
3' ss Score
9.34
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGAAGCTCCCTGGACGACTCCTCTTCCTGCAATATGTCGTGCAGACCTTGGAGGATGACTTCCAGCAAAACCTGAGGCTGCACCTGCTGCAGAAGTCAATAACCAAGAAAGTGCTTTCCTGTGACACATGCTTCAACAATGTCAA
Seq A exon
GGCAATGCTCCTCCTCCAGAGGATGTTGTCCTTCGCAGTGGAAGTGGACAGATCTCCCAACTGCAGCTCCTGTAAGATTGCAGATCTAATATTCCCATTTTTACTGAATATTCCTGTGAGGAGCCAAAG
Seq C2 exon
GGAAGCCCTCTTAAACACCATGGAGAGCAACCTGCTGCGCTGCAAACTGCTAGAGATGATGTTCCAGCACAGTTGTAAGGTCCCCACAAACTTGCCCTTGTCTCTGTCCAAGATCCTCTATTTTCTAGGCCACTCCTCCGTGCTGCTGCAATACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377_MULTIEX1-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGACGACTCCTCTTC
R:
AGACAAGGGCAAGTTTGTGGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]