HsaEX0011104 @ hg38
Exon Skipping
Gene
ENSG00000170085 | SIMC1
Description
SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr5:176322273-176336876:+
Coord C1 exon
chr5:176322273-176322425
Coord A exon
chr5:176324629-176324757
Coord C2 exon
chr5:176336720-176336876
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCCTATGTTCTGGACTCAGGAT
3' ss Score
7.07
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGATGTTATCAAGTGGCTGGTCAAAGCAGTAACTGAAGATGGATTGACTCAGCCCCCAAATGGAAATCAAACGTCTTCAGGAACAGGAATCTTGAAAGCCAGCAGTAGCCACCCTTCTTCCCAGCCCAACCTGACAAAGAACACCAATCAGCT
Seq A exon
GATTGTGTGCCAGCTTCAGAGGATGCTCTCCATAGCCGTAGAGGTGGACAGGACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGCCAGAG
Seq C2 exon
AGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGTTAGAAATCATATTCCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCAGGCCCTCTACTTTCTGAATAATTCTACGTCACTGCTCAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATTGACTCAGCCCCCAA
R:
TCAGAAAGTAGAGGGCCTGGG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development