MmuEX0001359 @ mm9
Exon Skipping
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54641065-54648494:+
Coord C1 exon
chr13:54641065-54641217
Coord A exon
chr13:54642785-54642913
Coord C2 exon
chr13:54648338-54648494
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTTCTGGATCCAGGAT
3' ss Score
8.05
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGATGTTATTAAGTGGCTGGTCAAAGCAGTGACTGAAAATGAATTAACTCCACCCCAAGATGAGACTCAGACCTCTCCAAGAACAGGAGTCTTGAAAACTAGCAGTGACCATCTGTCTCCCCGGCCTAACCAGAACAAGAACACCAATCAACT
Seq A exon
GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAGGAGCCAGAG
Seq C2 exon
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCATATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTATTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.572 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCACCCCAAGATGAGACT
R:
AGGGACGTGGAGTTGTTCAGA
Band lengths:
251-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: