DreEX6059331 @ danRer10
Exon Skipping
Gene
ENSDARG00000098209 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr14:49785643-49787940:-
Coord C1 exon
chr14:49787854-49787940
Coord A exon
chr14:49787297-49787428
Coord C2 exon
chr14:49785643-49785799
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTTACATTATCTGTTACAGAAT
3' ss Score
7.6
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
AGATGTAATATCGTGGACGATGACTGCTGCTAAGGAGTCAGTGAAACACTCTAAGGAACATCCAAAGAAAGAAGACCACTATCTTAA
Seq A exon
AATGGTACTATCTCTTCAGAGAATGTTATCATTGGCTCTGGAAGTGGACAAGGACCCCACCTACAATTCCGACAAACTTTCAGAAGCGCTGATTCGTAGTTTGAACAGATTGTGTTCATGCAGAGAGATGAG
Seq C2 exon
ACTCTTACTGTTGAATACTCTGGAGAGCAAGCTGCTGAAATGCAAGCTGTTGAATCTGCTCCTGGACGAGACTTGTTTACAGAAGACAGCTTTGCCTATGTCTCTAAGCCTGATTCTGCACTACCTCAAGAGCTCCACGCTGGCCTCAGACCCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098209-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGACGATGACTGCTGC
R:
AGAGGGGTCTGAGGCCAG
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]