RnoEX6053148 @ rn6
Exon Skipping
Gene
ENSRNOG00000016932 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:RGD Symbol;Acc:2319689]
Coordinates
chr17:10603424-10609380:-
Coord C1 exon
chr17:10609228-10609380
Coord A exon
chr17:10607410-10607538
Coord C2 exon
chr17:10603424-10603580
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTTTCTGCACCCAGGAT
3' ss Score
9.2
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGATGTTATCAAGTGGCTGGTCAAAGCAGTGACTGAAAATGCATTAACTCCACCCCAGGACGAGACGCAGACCTCTCCAGGACCAGGAGTCTTGAAAACGAGCAGTGACCATCTGTCACCCCAGCCTAACCTGGCCAGGAACACCAATCAACT
Seq A exon
GATTGTGTGTCAGCTTCAGAGGATGCTGTCCATCGCCGTAGAGGTAGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGACATCCCCGAGAGGAGCCAGAG
Seq C2 exon
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCTTAGAGATCATATTCCTCCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGGCCCTCTATTTTCTGAACAACTCCACATCCCTGCTCAAGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016932-'13-17,'13-15,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACTCCACCCCAGGACGAG
R:
GCAGGGATGTGGAGTTGTTCA
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]