BtaEX6050722 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034998 | SIMC1
Description
SUMO-interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr10:4979152-4990923:-
Coord C1 exon
chr10:4990795-4990923
Coord A exon
chr10:4979405-4979561
Coord C2 exon
chr10:4979152-4979265
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTTCTCCATGCAGAGA
3' ss Score
10.97
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GATTATATGCCAGCTCCAGAGGATGCTGTCTATCGCTGTAGAGGTGGACAGGACCCCCACATGCAGCTCCAATAAAATTGCTGAAATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGTCAGAG
Seq A exon
AGAGATGTTCTTTACTACCATGGAAAGCCACCTCCTACGCTGCAAAGTGCTGGAAATCATATTTCTCCACAGCTGTGAGACGCCCACCCGCCTACCCTTGTCTCTGGCCCAGGCCCTCTATTTTCTGAACCATTCCACATCACTGCTCAAGTGTCAG
Seq C2 exon
TCAGATAAAACCCAGTGGCAGAAATGGGATGAGCTGGTCGAGCACCTGCAGTTCCTGTTATCCAGTTACCAGCATGTTTTAAGAGGTAAGGAGCATTTGGGCACAAACCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034998-'13-14,'13-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTATATGCCAGCTCCAGAGGA
R:
CACCTGGTTTGTGCCCAAATG
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]