GgaEX1052566 @ galGal3
Exon Skipping
Gene
ENSGALG00000003377 | C5orf25
Description
NA
Coordinates
chr13:10497975-10499352:-
Coord C1 exon
chr13:10499224-10499352
Coord A exon
chr13:10498139-10498295
Coord C2 exon
chr13:10497975-10498059
Length
157 bp
Sequences
Splice sites
3' ss Seq
AGTAAATCTTTGTCTTGCAGGGA
3' ss Score
7.44
5' ss Seq
GAGGTATCT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GGCAATGCTCCTCCTCCAGAGGATGTTGTCCTTCGCAGTGGAAGTGGACAGATCTCCCAACTGCAGCTCCTGTAAGATTGCAGATCTAATATTCCCATTTTTACTGAATATTCCTGTGAGGAGCCAAAG
Seq A exon
GGAAGCCCTCTTAAACACCATGGAGAGCAACCTGCTGCGCTGCAAACTGCTAGAGATGATGTTCCAGCACAGTTGTAAGGTCCCCACAAACTTGCCCTTGTCTCTGTCCAAGATCCTCTATTTTCTAGGCCACTCCTCCGTGCTGCTGCAATACGAG
Seq C2 exon
GATGAAGTAGCTACATGGCAAAAATGGGATGAGCTGCTGCAGTACTTGAGCTTGCTGCTGCTGAGTTACCAAAATGTAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003377-'6-6,'6-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAATGCTCCTCCTCCAGAG
R:
TACTACATTTTGGTAACTCAGCAGCA
Band lengths:
210-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]