HsaEX0011101 @ hg38
Exon Skipping
Gene
ENSG00000170085 | SIMC1
Description
SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr5:176324629-176337146:+
Coord C1 exon
chr5:176324629-176324757
Coord A exon
chr5:176336720-176336876
Coord C2 exon
chr5:176337062-176337146
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTTCTCCACACAGAGA
3' ss Score
9.89
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GATTGTGTGCCAGCTTCAGAGGATGCTCTCCATAGCCGTAGAGGTGGACAGGACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGCCAGAG
Seq A exon
AGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGTTAGAAATCATATTCCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCAGGCCCTCTACTTTCTGAATAATTCTACGTCACTGCTCAAGTGTCAG
Seq C2 exon
TCAGATAAAAGCCAGTGGCAGACTTGGGACGAATTGGTTGAGCATCTGCAGTTTCTGCTGTCCAGTTATCAACATGTTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085-'35-55,'35-54,37-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGTGCCAGCTTCAGAGG
R:
TTAAAACATGTTGATAACTGGACAGC
Band lengths:
210-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development