MmuEX6058446 @ mm9
Exon Skipping
Gene
ENSMUSG00000043183 | 4732471D19Rik
Description
RIKEN cDNA 4732471D19 gene [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54642785-54648700:+
Coord C1 exon
chr13:54642785-54642913
Coord A exon
chr13:54648338-54648494
Coord C2 exon
chr13:54648616-54648700
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACTCCCTCTTGTCCACACAGGGA
3' ss Score
10.25
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GATTGTGTGTCAGCTTCAGAGGATGTTGTCCATCGCTGTAGAGGTGGACAGGACTCCAACCTGCAGCTCCAATAAAATAGCGGAGATGATGTTTGGGTTTGTGCTGGATATCCCTGAGAGGAGCCAGAG
Seq A exon
GGAGATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGATGCAAAGTCCTGGAGATCATATTCCTGCACAGCTGTGAGACACCCACCCGTCTCCCCTTGTCTCTGGCCCAGACCCTCTATTTTCTGAACAACTCCACGTCCCTGCTCAAGTGTCAA
Seq C2 exon
TCAGATAAAACGCAGTGGCAGACATGGGATGAGCTGGTTGAACATCTGCAGTTCCTGCTGTCCAGTTATCAACACGTGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTCAGCTTCAGAGGATG
R:
TCTCAGCACGTGTTGATAACTGG
Band lengths:
210-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: