HsaEX0011101 @ hg19
Exon Skipping
Gene
ENSG00000170085 | C5orf25
Description
chromosome 5 open reading frame 25 [Source:HGNC Symbol;Acc:24779]
Coordinates
chr5:175751632-175764149:+
Coord C1 exon
chr5:175751632-175751760
Coord A exon
chr5:175763723-175763879
Coord C2 exon
chr5:175764065-175764149
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCTTCTCCACACAGAGA
3' ss Score
9.89
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GATTGTGTGCCAGCTTCAGAGGATGCTCTCCATAGCCGTAGAGGTGGACAGGACCCCCACCTGCAGCTCCAATAAAATTGCCGAGATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAGGAGCCAGAG
Seq A exon
AGAAATGTTCTTTACTACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGTTAGAAATCATATTCCTCCACAGCTGTGAGACACCCACCCGCCTGCCTCTGTCTCTGGCCCAGGCCCTCTACTTTCTGAATAATTCTACGTCACTGCTCAAGTGTCAG
Seq C2 exon
TCAGATAAAAGCCAGTGGCAGACTTGGGACGAATTGGTTGAGCATCTGCAGTTTCTGCTGTCCAGTTATCAACATGTTTTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085-'23-21,'23-20,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGTGCCAGCTTCAGAGG
R:
TTAAAACATGTTGATAACTGGACAGC
Band lengths:
210-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)