BtaEX6051106 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12745877-12752362:-
Coord C1 exon
chr10:12752260-12752362
Coord A exon
chr10:12746362-12746508
Coord C2 exon
chr10:12745877-12746011
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTGTCCGGCCCACAGGCA
3' ss Score
8.27
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGGCACATTTGGGCTGAACTGCAGTGAACGCTGTGACTGCAGCCACGCCGATGGCTGCGACCCCGTGACAGGCCACTGCTGCTGCCTGGCCGGATGGACAG
Seq A exon
GCATCCACTGTGACAGCACGTGTCCCCCCGGACGCTGGGGCCCCAACTGCTCTGTGTCCTGCAGCTGTGAGAATGGCGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCGGGCTTCCGAGGACCCCTGTGCCAGAGAG
Seq C2 exon
TCTGTGCCCCCGGGTTCTATGGCCATGGCTGCACCCAGCCGTGTCCCCTCTGCGTGCACAGCAGCGGGCCCTGCCACCACGTCAGTGGCATCTGTGAGTGCCTCCCTGGATTCTCTGGAGCCCTTTGCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'9-11,'9-10,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(65.9=58.0)
C2:
PF0005319=Laminin_EGF=PD(31.8=30.4),PF126612=hEGF=WD(100=28.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACATTTGGGCTGAACTG
R:
TGATTGCAAAGGGCTCCAGAG
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]