DreEX6065231 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19194203-19218571:-
Coord C1 exon
chr18:19218469-19218571
Coord A exon
chr18:19201815-19201961
Coord C2 exon
chr18:19194203-19194341
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTACATTTTTAACAGGCA
3' ss Score
8.94
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GATGGCACATATGAGTTGGAGTGTCGCGAGCGTTGTGACTGTAACCACGCTGATGGATGTGACCATGTGAGTGGATTATGTCGCTGTCTGCCAGGATGGACAG
Seq A exon
GCATCCACTGTGACAGCATCTGCCCGCAAGGCTTCTGGGGGTCCAACTGCTCCATGACCTGCTCATGCCAGAACGGAGGTTCCTGCTCTCCTGAAGATGGGACCTGTGTTTGCGCTCCTGGCTACCGAGGGACGTCCTGCAAGAGAA
Seq C2 exon
TTTGTCCTCCAGGTTTCTATGGGCACCGCTGCAGTCAGTTATGCCCACAATGTGTGCACAGCACTGGGCCTTGTCACCACGTCACGGGTCACTGTGAGTGCCTGGCCGGCTTCTTCGGCTCGCTCTGCAACCAAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(50.0=65.7)
A:
PF126612=hEGF=PD(23.1=6.0),PF0005319=Laminin_EGF=PU(65.4=68.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATATGAGTTGGAGTGTCGCG
R:
TTGCCTTGGTTGCAGAGCG
Band lengths:
236-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]