GgaEX1035866 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20358704-20374642:-
Coord C1 exon
chr10:20374540-20374642
Coord A exon
chr10:20361403-20361549
Coord C2 exon
chr10:20358704-20358838
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGTGCCGTTGTGTTCTTCAGGCA
3' ss Score
7.96
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GATGGAACATATGGTCTTAATTGCAGTGAACGCTGTGACTGTAACCACGCAGATGGGTGCGATCCCGTCACCGGTTACTGCTGCTGCCTTGCTGGCTGGACAG
Seq A exon
GCATCCACTGTGACAATATGTGCACCCAGGGCCGCTGGGGACCGAACTGCTCCATCTCCTGTAGCTGTGAGAACGGGGGATCCTGTGCTCCGGAGGACGGCACCTGTGACTGTGCACCTGGCTACAGAGGACCCCTGTGCCAAAGAA
Seq C2 exon
TTTGCCCCCCTGGCTTCTATGGACACCACTGCAGCCAGCCATGCCCTCAGTGCGTGCACAGCAGCGGTCCCTGTCACCACGTGTCCGGGCACTGCGACTGCTTGCCAGGATTCTTCGGCGCGCTCTGCAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(61.7=58.0)
C2:
PF0005319=Laminin_EGF=PD(36.2=37.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACATATGGTCTTAATTGCAGTG
R:
CTTGGTTGCAGAGCGCGC
Band lengths:
236-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]