GgaEX1035866 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17694135-17713388:-
Coord C1 exon
chr10:17713286-17713388
Coord A exon
chr10:17700149-17700295
Coord C2 exon
chr10:17694135-17694263
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGTGCCGTTGTGTTCTTCAGGCA
3' ss Score
7.96
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GATGGAACATATGGTCTTAATTGCAGTGAACGCTGTGACTGTAACCACGCAGATGGGTGCGATCCCGTCACCGGTTACTGCTGCTGCCTTGCTGGCTGGACAG
Seq A exon
GCATCCACTGTGACAATATGTGCACCCAGGGCCGCTGGGGACCGAACTGCTCCATCTCCTGTAGCTGTGAGAACGGGGGATCCTGTGCTCCGGAGGACGGCACCTGTGACTGTGCACCTGGCTACAGAGGACCCCTGTGCCAAAGAA
Seq C2 exon
TGTGTCCCAGTGGAAAATATGGGAAGAACTGTGCTGAGCTCTGCCAGTGCACCGAGAACGGGACGTGCAATCCCATCGATGGGTCGTGCCAGTGCTTTCCAGGCTGGATAGGGAAGGACTGCTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-2/13=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(61.7=58.0)
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACATATGGTCTTAATTGCAGTG
R:
CTGGGAGCAGTCCTTCCCTAT
Band lengths:
229-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]