BtaEX6051108 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12736256-12738963:-
Coord C1 exon
chr10:12738835-12738963
Coord A exon
chr10:12737817-12737945
Coord C2 exon
chr10:12736256-12736492
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCCACTTCATGCTTCACAGGAT
3' ss Score
7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGA
Seq A exon
GATGCGCCCCAGGAACCTTTGGCTATGGGTGTCAGCAGCTATGCGAATGCATGAACAATGCCACCTGTGACCACGTCACTGGCACCTGTTATTGCAGCTCTGGATTCAAAGGGATCCGGTGTGACCAAG
Seq C2 exon
CTGCCCTCATGATGGAGGAGCTGAACCCCTACACCAAGATCAGCCCAGCGCTGGGTGCAGAGCGGCACTCAGTGGGTGCCGTCACGGGGATCGTCCTCCTGTTGTTCCTCATCGTGGTGCTGCTGGGACTGTTTGCCTGGCGCCGGCGGCGGCAAAAACAGAAGGGCCGGGACCTGGCTCCCCGCGTCTCCTACACGCCCGCCATGAGGATGACCAGCACTGACTACTCCCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(70.2=75.0)
A:
PF0005319=Laminin_EGF=PD(27.7=29.5),PF0005319=Laminin_EGF=PU(78.4=65.9)
C2:
PF0005319=Laminin_EGF=PD(18.9=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCAGCGTTTTATGGGAA
R:
AGCACCACGATGAGGAACAAC
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]