RnoEX0053785 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70170034-70172172:+
Coord C1 exon
chr8:70170034-70170162
Coord A exon
chr8:70170521-70170649
Coord C2 exon
chr8:70171936-70172172
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCACTCTGCATGCCATATAGGAT
3' ss Score
6.08
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTGCCCTGCAGCATTTTTTGGGAAGGATTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGGCGCCACTGTGAACAGA
Seq A exon
GATGTGCCCCTGGAACCTTTGGATACGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCATGTCACTGGTACCTGTTACTGCAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
Seq C2 exon
CTGCCCTCATGATGGATGAGCTGAATCCATACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCGGTGGGTGCTGTCACAGGCATCATCCTCCTGTTGTTCCTGGTTGTGGTGTTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCTCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
C2:
PF0005319=Laminin_EGF=PD(14.3=6.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAATGCACCTGTCGAA
R:
CTGGGGTGTAGGAGACTCGAG
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]