BtaEX6053102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44894657-44896563:-
Coord C1 exon
chr10:44896440-44896563
Coord A exon
chr10:44895595-44895704
Coord C2 exon
chr10:44894657-44895352
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTTTCTGTTACCAGGGA
3' ss Score
10.26
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GAACTAAAAAACTGGAGTGTATACTACCTGATGGAACTGGACGGCGTGTCATTCAAAACAACCTCAACTACCCCTTCAACATTGTGAGCTACGCAGATCACTTCTACCATACCGACTGGAGAAG
Seq A exon
GGACGGTGTTATAGCAGTAAACAGAGATACCGGCCAGTTTACTGATGAGTATCTCCCAGAGCAGCGATCTCACCTCTATGGGATAACTGCAGTCTACCCCTACTGTCCAG
Seq C2 exon
GAAGAAAGTAAATATGGACTTGGAGTTTACAATTGGAATCTGGACCCTAAAGAACATTTACCAGGAACAAAGGTGAAAGTGAAGAAGGAATTGGCCATTACAAGTTCCTGGACATACAAGATGAACATTTTCAGGCAAAAAGACTAAGTATATTTTGTGAAAAGTTTATACCTCAATCCTTACTACTGTATTTTTAAAAAACAAGTTATTTCAAGATTAAAAAAGGCAACAGAATTTTAATTGTTGCTTATAAGCAACTTTCCATAAACATTTATATCATATTTAAAAGGTCAAATTCATTCAACTAAGAACCAATTAGAGCACGCTGAGACCCTAAATCTGATTTTTGCTTTCTGGACAGAAATTAAAGCACACGTGATCAGTATAAAAATACAATCCTAAAAGATCATAAACCCTGACATAGTTAAGAGAAGGTTAATGCAGGACTGATGGGAAATAACCAACTTATTTATAGTTTCCCAAAAAAAGTTCTAAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945-'37-24,'37-23,39-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGATGGAACTGGACGGC
R:
AGTCTTTTTGCCTGAAAATGTTCA
Band lengths:
245-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]