GgaEX6039567 @ galGal4
Exon Skipping
Gene
ENSGALG00000012394 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr5:57989689-57991338:-
Coord C1 exon
chr5:57991215-57991338
Coord A exon
chr5:57990493-57990605
Coord C2 exon
chr5:57989689-57990412
Length
113 bp
Sequences
Splice sites
3' ss Seq
CAGTTTTCCTCTCTCCACAGTGA
3' ss Score
9.82
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GCACGAAGAAGCTGGAGTGCACGTTCCCTGACGGAGCAGGCAGGCGCATCATACACAACAACCTCAACTACCCCTTCAGCATCATTAGTTACGCCAGTCACTTCTACCACACCGACTGGAGACG
Seq A exon
TGATGGTGTGATTGCTGTCAATAAAGAAACCGGCTCCTTCACCGACGAGTACCTTCCAGAGCACCGATCGCACCTCTATGGCATCACAGCAGTTTATCCCTACTGCCCTGGAG
Seq C2 exon
CAAGGAAATAGCAATGACAACTTCACACCTAAAAGGACCTCAGACCCAGCATACTGTCACTGCATACAAGGGAGGGGGAAGCCCTTCACTAAGGCCAATGAAGCAACCTTCCGTCCTGCAAAAGATTATGTGGTTCTGACGTTATACCTCAGGTCTTTACTACTGTATTTTTTTTTTAAAGCGAGAAATATTGATAAGAGAAGAAATGGTCCTGTGAATCCTAAGGCCATTACTCTAACTCTTGCTTATGCAAGCAAATTTCAAGTGTAGTTTTCTTACTCAAATGCTTTACGTTATTGGAAGAAGAATGGGTTGATTTTTAATGGTATGACAATCTGACCATCAGGTCCTTTTATCCAAAAATAAGCACAGAGGGGAAGTTTGGGATGCAGTATCACGTCAGATCTAAGTGACCTACAGCCCTGCAGCCAACCGTGCATGTTCAGAAGTGTGCAGAACAGTTCTGTGATACAGCAAAGGTGCTGAAGCTTTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-'28-35,'28-34,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCACACCGACTGGAGAC
R:
GGCCTTAGGATTCACAGGACC
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]