MmuEX6039737 @ mm10
Exon Skipping
Gene
ENSMUSG00000021806 | Nid2
Description
nidogen 2 [Source:MGI Symbol;Acc:MGI:1298229]
Coordinates
chr14:19809980-19811787:+
Coord C1 exon
chr14:19809980-19810103
Coord A exon
chr14:19810954-19811066
Coord C2 exon
chr14:19811186-19811787
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCCTTCTTTTCCTAGGGA
3' ss Score
11.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACCAAAAAACTGGAGTGTACACTACCCGATGGAACTGGACGACGTGTCATCCAAAACCACCTCAATTACCCCTTCAGCATCGTCAGCTATGCAGATCACTTCTACCACACGGACTGGCGGAG
Seq A exon
GGATGGTGTTATATCAGTGAATAAGGACAGTGGCCAGTTTACTGATGAGTTTCTCCCTGAGCAGCGGTCTCATCTCTATGGGATCACTGCAGTCTACCCGTACTGTCCAACAG
Seq C2 exon
GAAGAAAATGAACACTAAATGTATAGGAGGATTTCAAGTTTACAAGAATCTTGTCCTAAGAATATTTGCTACGAAGGCAAAGACAGTGGAAAAGGAATTGGCCATTATGAGCTCTTGGCACACAAGTGAGCATTTTCAGTGCAGTGAGACTCAAGTATATTTTGTGAAATGTATACCTCAATCTTTACTACTGTATTTTTAAAAACAAAGGTTATCACAAGTTTAAAATAGAATTTTAATCATTGCTTATTAAATCAACTTTTGTAAACAGTTATTTAAAAGGCCAAATTCATTCAACATAGAACCAATGAGAGCAAAGACACTAAATCTGATTTTTGTTTGCCATGGATTCTACCTGGCCAAGAAAAGTAAAGCAAACAGATGGCTATGAGAACTGATTCCTGAAGCCCACTGAGGCCCGCCACAGACGGACCATGGGGTTGGCCCAGCGAAGTCCTCAGACTTTATTTATACTAAGGTGCTACAAAGAGTCCCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021806-'23-33,'23-31,34-33=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000022340fB2700
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACCCGATGGAACTGGA
R:
TGAAAATGCTCACTTGTGTGCC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types