RnoEX0059809 @ rn6
Exon Skipping
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4894213-4895696:-
Coord C1 exon
chr15:4895573-4895696
Coord A exon
chr15:4894675-4894785
Coord C2 exon
chr15:4894213-4894549
Length
111 bp
Sequences
Splice sites
3' ss Seq
CATGAATCTTCCTTTACCAGGGA
3' ss Score
7.68
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAACCAAAAAACTGGAGTGTACACTACCTGATGGAACTGGACGCCGCGTCATCCAAAACCACCTCAATTACCCCTTCAGTGTTGTCAGTTACGCGGATCACTTCTACCACACGGACTGGCGGAG
Seq A exon
GGATGGTGTTATATCAGTGAGTAAAGACAGTGGCCAGCTTACTGATGAGTATCTTCCTGAACAGCTCTCACCTCTATGGCATCACTGCAGTCTATCCCTACTGTCCAACAG
Seq C2 exon
GAAGAAAGTGAACATTAAATGTACAGGAGGATTTCAAGTTTACAAGAACCTAAGAACATTGCTACGAAGGCAAAGAGTGAAGGAGGAATTGGCCATTATGAGCTCTTGGCACACAAAACGAGCATTTTCAGTGGAGTGAGACTCAAGTCTATCTTGTGAAATGTATACCTCAATCCTGACTACTGTATTTTTAAAAACAAAGGTTATCACAAGTTTCAGATAGAATGTTATATAAACAATCAGCTAGAGCAGACACCAAGTCTGACTTTTGTTTGCCACGGATTCTACCTGGCCAAGAAAAGTGAAGCAAACGAATGTTATGAAAACTTATTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341-'39-33,'39-31,41-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGATGGAACTGGACGC
R:
TCTCACTCCACTGAAAATGCTCG
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]