DreEX0050609 @ danRer10
Exon Skipping
Gene
ENSDARG00000075707 | nid2a
Description
nidogen 2a (osteonidogen) [Source:ZFIN;Acc:ZDB-GENE-030827-2]
Coordinates
chr17:14788993-14792035:-
Coord C1 exon
chr17:14791912-14792035
Coord A exon
chr17:14790508-14790617
Coord C2 exon
chr17:14788993-14789464
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTCGTCTGTGTTGTTTCAGGGA
3' ss Score
11.45
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GAACCAAGCGTCTGGAGTGTATTTCACCAAACGGGACAGGCAGACGCGTGATCCAGAGTAACCTGAACTACCCTTTCAGCATGGTGTACTTCGCCAATCACTACTACTACACTGACTGGAGGAG
Seq A exon
GGACGGAGTCATCTCTCTAGGTCGAGATAACCAGTTAACAGATGAGTACTTACCTGATCAGAGGTCTCATTTGTATGGTATCACAGTCGCCCCTCCACAATGTTTATAAG
Seq C2 exon
GGAGATGCTAATGACAGAGCCAGCTTTACATGGTGCTATTTTTGGCTGAGTGTTTGGAGAGCTTGTGAGAATCACAGCCGAGTCGTGAACCAAAGAGAAGGTTAATGGAAGAAAGCGCAAGTCTTGATAAACGCCACCGTCAATGCCAAAGTGCAAATTTACAAACGTGAAACAGCGTGAATATTTTCTCAAAATAGTTTTGTAAATTTGTTTTATACCTCATTTCTTTCTACTGTACTTTTGTATGTGACTTTTTGTTTAAAAAAACTAACAAATAAAAAAAACCGTAAGAGATTAGTTGTGTCCTTTTTACGTTTAGGAAAAATAAAACAGTATTTGGGTGGAAAAATGTTTTGTTAGTGAAACTGCTTTGAACAACCAAAATGGGCTTTTACCAAAGTTAATGTTTTTAATCCTTTTATCTTTTGTAAAATGTGATATTTATAACAATAAAATGTGATTGACAACTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075707-'34-38,'34-37,35-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCACCAAACGGGACAGGC
R:
GCATTGACGGTGGCGTTTATC
Band lengths:
250-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]