BtaEX6053653 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58073125-58077257:+
Coord C1 exon
chr10:58073125-58073265
Coord A exon
chr10:58075798-58075923
Coord C2 exon
chr10:58077174-58077257
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCCTGAATGTAGATG
3' ss Score
7.9
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CACGTTTTCAAATTAGAACAAGAAGAATATATGAAAGAACAAATTCCATGGACACTCATAGATTTTTATGATAATCAGCCTTGCATTAATCTTATAGAATCTAAACTGGGCATTCTAGATTTGCTGGATGAGGAATGCAAG
Seq A exon
ATGCCTAAAGGTACAGATGACACTTGGGCTCAAAAATTGTACAACACACATTTGAACAAATGTGCACTATTTGAGAAGCCCCGCCTATCAAACAAAGCTTTCATCATCCAGCATTTTGCTGACAAA
Seq C2 exon
GTGGAATACCAGTGTGAAGGCTTTCTGGAAAAGAATAAAGACACCGTTTTTGAAGAACAAATTAAAGTTCTTAAATCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGTTTTCAAATTAGAACAAGAAGA
R:
TTTGTTCTTCAAAAACGGTGTCT
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]