GgaEX0006271 @ galGal4
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8291435-8294861:+
Coord C1 exon
chr10:8291435-8291575
Coord A exon
chr10:8292142-8292267
Coord C2 exon
chr10:8294778-8294861
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTTTCTATATAGATG
3' ss Score
10.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CATGTGTTTAAGCTGGAACAAGAAGAATACATGAAAGAACAAATACCATGGACCTTGATTGATTTCTATGACAATCAGCCTTGCATCAACCTCATAGAAGCCAAAATGGGAGTTCTGGATCTGTTAGATGAGGAATGCAAG
Seq A exon
ATGCCAAAAGGCTCGGATGACACTTGGGCCCAAAAACTGTACAATACTCATTTGAATAAATGTGCCCTCTTTGAAAAACCACGTTTATCCAATAAGGCTTTTATCATCAAACACTTTGCTGACAAG
Seq C2 exon
GTGGAATATCAGTGTGAAGGCTTTCTGGAAAAGAATAAGGATACAGTTTATGAAGAGCAAATTAAGGTCCTAAAATCAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTTAAGCTGGAACAAGAAGA
R:
ACTTGATTTTAGGACCTTAATTTGCT
Band lengths:
220-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]