HsaEX6074835 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52387829-52392070:-
Coord C1 exon
chr15:52391930-52392070
Coord A exon
chr15:52389238-52389363
Coord C2 exon
chr15:52387829-52387912
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCCATGAATATAGATG
3' ss Score
5.96
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATGTCTTCAAATTGGAGCAAGAAGAATATATGAAGGAACAAATTCCATGGACACTCATAGATTTTTATGATAATCAGCCTTGTATTAATCTTATAGAATCAAAACTAGGCATTCTAGATTTACTGGATGAGGAATGCAAG
Seq A exon
ATGCCTAAAGGCACAGATGACACCTGGGCCCAAAAATTGTACAACACACATTTGAACAAATGTGCACTCTTTGAAAAGCCTCGTCTATCAAACAAAGCTTTCATCATCCAACATTTTGCTGACAAA
Seq C2 exon
GTGGAATACCAGTGTGAAGGATTTCTCGAAAAGAATAAAGACACCGTTTTTGAAGAACAAATTAAAGTTCTTAAATCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535-'37-41,'37-40,39-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.3=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
ENST00000358212fB20577
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCTTCAAATTGGAGCAAGA
R:
TTTGTTCTTCAAAAACGGTGTCT
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains