RnoEX6036545 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82075223-82079349:+
Coord C1 exon
chr8:82075223-82075363
Coord A exon
chr8:82077043-82077168
Coord C2 exon
chr8:82079266-82079349
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTTCTCCCCAAGATG
3' ss Score
8.56
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATGTCTTCAAACTGGAACAGGAGGAGTACATGAAGGAACAAATTCCATGGACACTCATAGATTTCTATGATAATCAGCCTTGTATCAATCTTATAGAATCTAAACTGGGTATTCTAGATTTGCTGGATGAGGAATGTAAG
Seq A exon
ATGCCTAAAGGTACCGATGACACATGGGCCCAAAAACTATACAACACACATTTGAACAAATGTGCTCTCTTTGAGAAGCCCCGCATGTCAAACAAAGCTTTCATCATCAAACATTTTGCTGACAAA
Seq C2 exon
GTGGAGTACCAGTGTGAAGGTTTTCTTGAAAAGAATAAAGACACTGTTTTTGAAGAACAAATTAAAGTCCTTAAGTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGGAGGAGTACATGA
R:
TGCTTGACTTAAGGACTTTAATTTGT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]