MmuEX6067259 @ mm10
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75151893-75156265:+
Coord C1 exon
chr9:75151893-75152033
Coord A exon
chr9:75153756-75153881
Coord C2 exon
chr9:75156182-75156265
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTTCTCCCCAAGATG
3' ss Score
8.89
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
CATGTCTTCAAATTGGAACAGGAGGAATATATGAAGGAACAGATTCCATGGACACTTATAGATTTCTATGATAATCAGCCTTGTATCAATCTTATAGAATCTAAACTGGGAATTCTCGATTTGCTGGATGAGGAATGTAAG
Seq A exon
ATGCCTAAAGGCACAGATGACACATGGGCCCAAAAACTGTACAACACACATTTGAACAAATGTGCCCTCTTTGAGAAGCCCCGCATGTCAAACAAAGCTTTCATCATCAAACATTTTGCTGACAAA
Seq C2 exon
GTGGAGTACCAGTGTGAAGGTTTTCTTGAAAAGAATAAAGATACTGTTTTTGAAGAACAAATTAAAGTCCTTAAGTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'25-21,'25-20,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=FE(4.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCAAATTGGAACAGGAGGA
R:
TGCTTGACTTAAGGACTTTAATTTGT
Band lengths:
221-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types