BtaEX6053658 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006489 | MYO5A
Description
myosin VA (heavy chain 12, myoxin) [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr10:58057292-58060265:+
Coord C1 exon
chr10:58057292-58057373
Coord A exon
chr10:58057999-58058106
Coord C2 exon
chr10:58060159-58060265
Length
108 bp
Sequences
Splice sites
3' ss Seq
CAATTTTTCCTTAACTGCAGGAG
3' ss Score
8.2
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCAGAAGAGGAGAGAAACTATCATATCTTCTATCAACTTTGTGCCTCAGCAGACTTATCTGAATTTAAAGTGCTGCGATTAG
Seq A exon
GAGATGCAAATAACTTTCATTACACGAATCAAGGTGGCAGTCCTGTGATTGAAGGAGTAGATGATGCCAAGGAGATGGCACATACCAGGCAGGCCTGCACTTTGCTAG
Seq C2 exon
GAATTAGTGAATCTCATCAGATGGGAATTTTCCGAATACTTGCTGGCATCCTACACTTAGGCAATGTTGTGTTTATGTCTCGAGATTCAGACAGCTGCACAATCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006489-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAGGAGAGAAACTATCA
R:
GGGATTGTGCAGCTGTCTGAA
Band lengths:
188-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]