GgaEX0006270 @ galGal3
Exon Skipping
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10028735-10030800:+
Coord C1 exon
chr10:10028735-10028816
Coord A exon
chr10:10030113-10030220
Coord C2 exon
chr10:10030694-10030800
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGTTAGTTTTTGTCTTACAGGGA
3' ss Score
6.76
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GCAGAAGAGGAGAGGAATTACCACATCTTTTACCAACTCTGTGCCTCTGCAGCATTACCTGAATTTAAAACTCTACGATTAG
Seq A exon
GGAATGCAAATTACTTTCATTATACAAAGCAAGGTGGAAGCCCTGTGATTGATGGCATTGATGATGCTAAGGAAATGGTAAACACCAGACAAGCCTGCACTTTGCTAG
Seq C2 exon
GGATTAGTGATTCCTACCAGATGGGAATTTTCCGAATCCTTGCTGGCATCCTTCACTTGGGCAACGTGGAGTTTGCATCTCGGGATTCTGACAGCTGCGCCATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGAGGAGAGGAATTACCAC
R:
GCAGCTGTCAGAATCCCGAGA
Band lengths:
180-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]